• Air date: 10 Sep '05 26 episodes
      Leonardo became more reserved and isolated following the final episode of the previous season in which he, his brothers and their master were almost killed. He went so far as to lash out at Splinter, causing him serious injury.
  • List of Episodes (26)
    • 1. Cousin Sid

      10 Sep '05
      The Turtles hide out at Casey's farm to recover from their battle with the Shredder. However the ghosts of Casey's past come back to haunt him when his cousin Sid arrives with a gang in tow...
    • 2. The Peoples' Choice

      17 Sep '05
      The Turtles bear witness to a rumble in the urban jungle between two alien princesses, fighting for the right to party and rule. Pistols at twenty paces. Tally ho.
    • 3. Wing And A Prayer

      25 Sep '05
      Ascending to new heights, the Turtles aid the winged warrior named Raptarr against the renegade Mephos to save the floating city of the Avians.
    • 4. Sons Of The Silent Age

      01 Oct '05
      The Turtles face a species of the deep, and when April gets too close to the action, she grasps a truth behind the current of environmental consequence.
    • 5. Dragons' Brew

      08 Oct '05
      Casey and Leo investigate a series of large-scale robberies. Not surprisingly, Hun and the Purple Dragon are to blame. However one of their hauls is a crate that should never have been opened!
    • 6. I, Monster

      15 Oct '05
      Casey and the Turtles are practising their hide-and-seek skills at an abandoned warehouse complex. All the while, a strangely familiar figure watches them from the shadows - with an army of rats at his command!
    • 7. Grudge Match

      22 Oct '05
      A return to the Battle Nexus, a time to fight, is Mikey bound for glory once more?
    • 8. All Hallows Theives

      29 Oct '05
      On Halloween night, a mustachioed man visits April, expressing interest in a rather unusual item: a hideous six-armed idol. But the statue is no ordinary junkshop knickknack; it can be used to invoke a horde of imps that proceed to clean out the city and bring its spoils to their master, a criminal who calls himself The King of Thieves.
    • 9. Bad Day

      05 Nov '05
      The Turtles learn first hand what it means to have a "Bad Shell Day" as calamity after calamity befalls them. This time the Turtles may not be able to save everybody...
    • 10. Aliens Among Us

      12 Nov '05
      When the President of the United States arrives in New York City, an invasion of what seems to be aliens attacks at the most inconvenient time. However, the Turtles investigate this "invasion" and find out that Bishop is behind it. The question is - why?
    • 11. Dragons Rising

      19 Nov '05
      The Purple Dragons have evolved from a basic street gang to a smuggling syndicate that works throughout New York. Leonardo goes with Casey to put an end to Hun's plans. However, Casey and the recently angry Leo will have to control their own fury if they want to bring justice-- and not just veangeance-- out of this.
    • 12. Still Nobody

      26 Nov '05
      The Turtles help Nobody protect an old man when he witnesses Jengo, leader of the Turks, harming a Turks member. Can the Turtles and Nobody stop the Turks?
    • 13. Samurai Tourist

      03 Dec '05
      Usagi and Gen come to New York for a visit with the Turtles. Gen gets a little carried away by the bright lights of the big city and goes wandering off on his own. And if the modern world wasn't dangerous enough, an assassin from Usagi's world has followed Usagi and Gen. His target: Leonardo.
    • 14. The Ancient One

      10 Dec '05
      It is time for Leonardo to move on. Splinter sends Leo to a new sensei, or rather, a very old sensei. The journey is long and perilous. Can Leonardo look into himself and find the right answers to his questions? Can he even find the right questions?
    • 15. Scion Of The Shredder (1)

      04 Feb '06
      While Leonardo is in Japan studying with the Ancient One, Karai as the new Shredder makes her attack. Will Leo return to New York? Will he find out what happened to his home and his family? And, have Splinter and Turtles really been destroyed?
    • 16. Prodigal Son

      04 Feb '06
      Leonardo returns from Japan to find the lair in ruins and his family nowhere to be seen. As he investigates he finds that the Foot is back to full strength - with Karai as their leader. Since the Foot believe Leo to be dead, he puts all that he has learnt from the Anicent One into practice...
    • 17. Outbreak

      18 Feb '06
      Bishop has too deal with the consequenses of his actions when people and animals all over New York starts mutating into horrible beasts after his "alien" invasion.
    • 18. The Trouble With Augie

      25 Feb '06
      For several years April's uncle Augustus (aka Augie) has been missing.
    • 19. A Tale Of Master Yoshi

      04 Mar '06
      When Stockman decides to clone himslf, a new body everything goes wrong. The body's rapid decomposition causes its mind to deteriorate, and he goes after April in revenge to the destruction of his mousers.
    • 20. The Return Of Savanti (1)

      11 Mar '06
      All settled in their new lair, but with no electricity Leonardo tells his brothers and Splinter a tale about love and betrayal...and a pet rat.
    • 21. The Return Of Savanti (2)

      18 Mar '06
      The evil Savanti Romero is back for revenge on the Turtles after being humiliated by them. He sends on a trip through time where no humans have been before
    • 22. Insane In The Membrane

      18 Mar '06
      The Turtles' only option to escape the Cretaceous is to retrieve the Time Scepter from Savanti, but it will not be easy, as he has mastered how to use it. His first plan is to destroy Renet, absorb her powers, then have enough assurance to easily kill the Turtles.
    • 23. Adventures In Turtlesitting

      25 Mar '06
      With the outbreak-mutant situation the Turtles feel they have to deal with and Donatello sick his brothers leave him with Casey and April for care. But Donatello is not sick but in the last stages of a second mutation.
    • 24. Good Genes (1)

      01 Apr '06
      With Donatello sick the Turtles are desperate. So desperate that they decide to try and sneak into Bishops facility, where they realize they have to make a deal with the devil if they want to cure Donatello
    • 25. Good Genes (2)

      08 Apr '06
      To cure Donatello the Turtles made a deal with the devil aka Bishop. Now they have to retrive a pendant that is supposed to help Bishop in his research. The thing is that the pendant is in the heart of the Foot-building, and Karai won't just hand it over